PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G186400.1
Common NameB456_005G186400, LOC105794699
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 240aa    MW: 26499.3 Da    PI: 6.5049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G186400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000267496123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C k F ++  L  H++ H
  Gorai.005G186400.1 74 FECQYCFKEFANSQALGGHQNAH 96
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-670101No hitNo description
Gene3DG3DSA:3.30.160.602.7E-570100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40674101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEKDACDCEN GYSQAGFSVE KKLRLFGFEL NPSNSNGDSM KVCGEGDESV NSSNTISSTA  60
KEKSSMAEAD DKKFECQYCF KEFANSQALG GHQNAHKKER MKKKRLQLQA KRASLNCYLQ  120
PFQNSLGFGS PWYYDSPAYA TADFTPYEES QISFSQFEQD SHFNGSHASN LNSLPSEMIP  180
FQRDSSMFTL IQGDRSRDNR PLFKPSSSTP TKQSCKTLDL QLGLGLQQST IQSSSGGGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4340630.0KM434063.1 Gossypium hirsutum C2H2 zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479446.11e-178PREDICTED: zinc finger protein 5-like
TrEMBLA0A0D2RHM91e-178A0A0D2RHM9_G
STRINGVIT_01s0026g00850.t013e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-18zinc finger protein 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]